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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69439960_69440433_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69439960 - 69440433
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCGTGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GAATTCTTAACA
Flanking Amino Acid:
YTAELYPTIVRSLAVGSGSM
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
70.6
0.46
1
65
41.3
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
74.8
0.78
1.2
74.29
36.5

Associated Gene:

Gene:
SLC22A16
Ensembl Gene ID:
ENSAPLG00000014519
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015132
69431309 - 69445825
14517