About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69440534_69445612_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69440534 - 69445612
Intron Length:
5079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TCTACCCTTACA
Flanking Amino Acid:
LRSVWIFMPLLLVGIMALLS
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
85.6
30.4
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
84.4
0.77
0.8
77.9
36.6
Minor 5ss
44.2
-0.6
2.9
66.4
38.5
Minor BPS
52.6
0.08
2
69.28
42.4

Associated Gene:

Gene:
SLC22A16
Ensembl Gene ID:
ENSAPLG00000014519
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015132
69431309 - 69445825
14517