About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69501342_69506299_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69501342 - 69506299
Intron Length:
4958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TCTTCCTAAAGC
Flanking Amino Acid:
SDDKSLRVWEWDIPVDFKYI
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
88.5
0.87
0.7
83.8
24.3
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
61.9
0.35
2
73.88
43.5

Associated Gene:

Gene:
CDC40
Ensembl Gene ID:
ENSAPLG00000013973
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014611
69497773 - 69532517
34745