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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69506434_69506708_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69506434 - 69506708
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAATTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTTCTTTAATT
Flanking Amino Acid:
AGMSDKKIVQWDIRSGEIVQ
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.7
0.67
0.8
74.9
33.6
Minor 5ss
43.9
-0.7
2.8
58.4
46.1
Minor BPS
84.4
1.16
1
91.31
32.6

Associated Gene:

Gene:
CDC40
Ensembl Gene ID:
ENSAPLG00000013973
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014611
69497773 - 69532517
34745