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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69506825_69507947_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69506825 - 69507947
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGAAT
U12 Branch Point Sequence:
TCCCTCTTGACC
Flanking Amino Acid:
RYIKLWDTETGQCISRFTNR
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.7
43.7
Major BPS
66.8
0.42
1.4
75.9
36.3
Major PPT
82.9
0.74
0.9
80.8
36.8
Minor 5ss
46.1
-0.4
3.2
63.6
48.1
Minor BPS
64
0.42
1.3
66.45
39.7

Associated Gene:

Gene:
CDC40
Ensembl Gene ID:
ENSAPLG00000013973
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014611
69497773 - 69532517
34745