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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69508050_69509578_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69508050 - 69509578
Intron Length:
1529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATAGCA
5'SS Class:
major
3'SS Sequence:
ATCTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
TTTATTGCATCT
Flanking Amino Acid:
GDRRCLRTFIGHGKAVRDIC
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
63.3
34.7
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
85.9
0.81
0.7
81.1
30.2
Minor 5ss
30.9
-2.2
3.3
36.8
42.3
Minor BPS
42.8
-0.4
2.3
68.02
43.3

Associated Gene:

Gene:
CDC40
Ensembl Gene ID:
ENSAPLG00000013973
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014611
69497773 - 69532517
34745