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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69509625_69510292_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69509625 - 69510292
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTTCTTCCAAG
Flanking Amino Acid:
LSCSMDCKIKLWEVYGDRRC
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
79.4
0.66
1
79.3
33
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
48.7
-0.2
2.1
64.71
43.2

Associated Gene:

Gene:
CDC40
Ensembl Gene ID:
ENSAPLG00000013973
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014611
69497773 - 69532517
34745