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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69510368_69511289_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69510368 - 69511289
Intron Length:
922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTGTCCTTATTT
Flanking Amino Acid:
QIHVWSGHTKGVSAVRLFPL
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
85.3
0.79
0.8
79.7
31.2
Minor 5ss
33.8
-1.8
3.3
49
46.8
Minor BPS
74.8
0.86
1.5
87.69
38.3

Associated Gene:

Gene:
CDC40
Ensembl Gene ID:
ENSAPLG00000013973
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014611
69497773 - 69532517
34745