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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69513181_69513820_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69513181 - 69513820
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTTTTTAAAA
Flanking Amino Acid:
DEKEVAKPSEEEQKELDEIT
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
91.3
0.93
0.7
84.8
35.6
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
67.4
0.54
1.3
71.85
33.4

Associated Gene:

Gene:
CDC40
Ensembl Gene ID:
ENSAPLG00000013973
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014611
69497773 - 69532517
34745