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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69515678_69524353_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69515678 - 69524353
Intron Length:
8676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
ATAACATTATTT
Flanking Amino Acid:
EQQRRTFVTYGYALDPSIDN
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
49.7
0.05
1.9
69.63
41

Associated Gene:

Gene:
CDC40
Ensembl Gene ID:
ENSAPLG00000013973
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014611
69497773 - 69532517
34745