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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69525989_69532325_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69525989 - 69532325
Intron Length:
6337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TGTTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GGTGTTTTAATC
Flanking Amino Acid:
VDSAPEVAVKEDVETGVHLD
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
59.4
0.27
1.4
62.8
37.3

Associated Gene:

Gene:
CDC40
Ensembl Gene ID:
ENSAPLG00000013973
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014611
69497773 - 69532517
34745