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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69587136_69598684_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69587136 - 69598684
Intron Length:
11549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCCCCCCTATTT
Flanking Amino Acid:
ANIIRQLSSLSKYAEDIFGE
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
71.8
0.49
0.8
69.1
29.8
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
48
-0
1.9
65.76
45.1

Associated Gene:

Gene:
WASF1
Ensembl Gene ID:
ENSAPLG00000013641
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014207
69587003 - 69614152
27150