About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69607229_69608043_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69607229 - 69608043
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATATG
5'SS Class:
strong_major
3'SS Sequence:
AACTCTCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTGCACAACT
Flanking Amino Acid:
DKRKEKRKQKQKNLDRPHEP
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
76.8
38.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
73.5
0.53
0.9
65.8
35.1
Minor 5ss
44.8
-0.6
2.7
59.2
45.4
Minor BPS
55.9
0.26
2.2
85.52
40.5

Associated Gene:

Gene:
WASF1
Ensembl Gene ID:
ENSAPLG00000013641
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014207
69587003 - 69614152
27150