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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69608217_69610222_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69608217 - 69610222
Intron Length:
2006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTACTCTT
5'SS Class:
major
3'SS Sequence:
TATTTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTTTGCTATTT
Flanking Amino Acid:
ANGPASHFESRSQAYVDHMD
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.3
73.9
42.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
86.8
0.83
0.7
81.2
30.6
Minor 5ss
42.1
-0.9
2.9
59.9
44.4
Minor BPS
46.2
-0.2
2.4
75.75
41.6

Associated Gene:

Gene:
WASF1
Ensembl Gene ID:
ENSAPLG00000013641
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014207
69587003 - 69614152
27150