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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69612356_69613994_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69612356 - 69613994
Intron Length:
1639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGGTGTTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAC
U12 Branch Point Sequence:
GGGATGGTAACA
Flanking Amino Acid:
RSVLLEAIRKGIQLRKVEEQ
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
59.3
0.23
1.3
61.4
43.2
Major PPT
77
0.61
0.9
73.6
41.8
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
39.8
-0.7
2.4
48.83
41.8

Associated Gene:

Gene:
WASF1
Ensembl Gene ID:
ENSAPLG00000013641
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014207
69587003 - 69614152
27150