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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69635769_69636212_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
69635769 - 69636212
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCCGGGACA
5'SS Class:
major
3'SS Sequence:
CCTGCCCGCGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCTGGAT
U12 Branch Point Sequence:
GTCCCCTGGATG
Flanking Amino Acid:
AASGRGGGGGGNASLELASR
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.3
61
37.6
Major BPS
48.6
-0
1.4
48.7
45.1
Major PPT
46.7
-0.1
1.6
49.5
34.1
Minor 5ss
16.7
-3.8
3.6
23.6
36.8
Minor BPS
49.6
-0.1
1.6
53.59
41.4

Associated Gene:

Gene:
GPR6
Ensembl Gene ID:
ENSAPLG00000013626
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014189
69634846 - 69636321
1476