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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69684816_69687528_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69684816 - 69687528
Intron Length:
2713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATAAATA
Flanking Amino Acid:
KPDETGKSVLGNKSNREETV
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
74.9
38.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72.8
0.51
0.8
67.9
32.2
Minor 5ss
39.1
-1.2
2.8
40.9
45.3
Minor BPS
60.3
0.32
1.9
74.94
36.6

Associated Gene:

Gene:
FIG4
Ensembl Gene ID:
ENSAPLG00000013266
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013862
69663858 - 69726540
62683