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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69688978_69691622_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69688978 - 69691622
Intron Length:
2645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTGA
5'SS Class:
major
3'SS Sequence:
ATTTCCTGTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ATTTCCTGTACA
Flanking Amino Acid:
NTLGLSQTRRSYTYWWTTDV
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
69.5
37.4
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
78.7
0.65
0.9
73
36.8
Minor 5ss
45.7
-0.5
2.5
59.1
45.3
Minor BPS
66
0.5
1.8
78.9
36.6

Associated Gene:

Gene:
FIG4
Ensembl Gene ID:
ENSAPLG00000013266
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013862
69663858 - 69726540
62683