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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69698946_69700839_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69698946 - 69700839
Intron Length:
1894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AACAGTTTAATA
Flanking Amino Acid:
PNLQFDTDAVRLFEELYEDH
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84
0.77
0.8
81.3
30.8
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
48.8
-0.1
1.7
55.1
38.2

Associated Gene:

Gene:
FIG4
Ensembl Gene ID:
ENSAPLG00000013266
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013862
69663858 - 69726540
62683