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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69703876_69705803_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69703876 - 69705803
Intron Length:
1928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAAAG
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTATCTTTACT
Flanking Amino Acid:
IPWDMAKYTKSKLCNVLDRL
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
64.9
41
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.1
0.88
0.6
88.3
21.3
Minor 5ss
30.8
-2.2
3.2
39
46.4
Minor BPS
65
0.55
1.7
81.51
39.5

Associated Gene:

Gene:
FIG4
Ensembl Gene ID:
ENSAPLG00000013266
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013862
69663858 - 69726540
62683