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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69705938_69708791_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69705938 - 69708791
Intron Length:
2854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAATAT
5'SS Class:
major
3'SS Sequence:
CTTTTCACCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACC
Flanking Amino Acid:
SPIIILNLVKEREKRKHERI
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
71.2
35.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
67.7
0.4
1
68.2
31
Minor 5ss
37.9
-1.4
3.4
55.8
48.4
Minor BPS
61.4
0.34
1.7
74.92
35.8

Associated Gene:

Gene:
FIG4
Ensembl Gene ID:
ENSAPLG00000013266
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013862
69663858 - 69726540
62683