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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69709685_69710129_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69709685 - 69710129
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCTGTTCATT
Flanking Amino Acid:
RFLKRGANCEGDVANEVETE
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.7
0.58
0.9
70.5
34.8
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
48.3
-0
2.4
76.4
40.9

Associated Gene:

Gene:
FIG4
Ensembl Gene ID:
ENSAPLG00000013266
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013862
69663858 - 69726540
62683