About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69711244_69712641_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69711244 - 69712641
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TAACGACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TAATCGTTAATG
Flanking Amino Acid:
DEGLSAQGGSGVFGICSKPY
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.9
35.2
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
62.6
0.28
1
52
42.4
Minor 5ss
38.8
-1.3
2.9
45.4
43.9
Minor BPS
58.9
0.14
2.1
65.45
42.4

Associated Gene:

Gene:
FIG4
Ensembl Gene ID:
ENSAPLG00000013266
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013862
69663858 - 69726540
62683