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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69712791_69715017_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69712791 - 69715017
Intron Length:
2227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
AACTGTCTATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTATTAATAAAT
Flanking Amino Acid:
NVDLSSNFYFSYSYDLSHSL
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.13
0.6
93.5
20.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
66.4
0.37
1
63.4
42
Minor 5ss
38.4
-1.3
2.8
52.3
44.3
Minor BPS
51
0.11
1.9
76.49
39.1

Associated Gene:

Gene:
FIG4
Ensembl Gene ID:
ENSAPLG00000013266
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013862
69663858 - 69726540
62683