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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69727698_69733096_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69727698 - 69733096
Intron Length:
5399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAATGTTA
5'SS Class:
major
3'SS Sequence:
CATTTTGTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATATATTAAAT
Flanking Amino Acid:
VNSFSSNTPLCQELLFKGQS
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.1
64
36.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
74.4
0.55
0.9
73.1
36.9
Minor 5ss
42.2
-0.9
3.3
57.1
42.9
Minor BPS
57.8
0.32
1.7
76.64
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013181
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013728
69727533 - 69752833
25301