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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69736690_69738654_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69736690 - 69738654
Intron Length:
1965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTCCTTGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
LKPDFLINIKCSDYDLCQRI
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.7
0.53
0.9
74.1
36.2
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013181
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013728
69727533 - 69752833
25301