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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69738829_69739518_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69738829 - 69739518
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AAATATTTAACT
Flanking Amino Acid:
EEIEEQEEEEIAEDSLKMSE
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.8
0.67
0.8
77.5
36.5
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
67.4
0.63
1.4
77.87
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013181
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013728
69727533 - 69752833
25301