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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69743980_69744062_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69743980 - 69744062
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ACTGTCTAAATT
Flanking Amino Acid:
IVMGDPELAVSFLGKMYVLS
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
73.6
37.4
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
74.8
0.56
1
78.5
33.7
Minor 5ss
28.4
-2.5
2.9
33
41.8
Minor BPS
53.5
0.19
1.8
68.91
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013181
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013728
69727533 - 69752833
25301