About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69744248_69747768_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69744248 - 69747768
Intron Length:
3521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAATAAA
5'SS Class:
major
3'SS Sequence:
TGCTCCTGATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
AGTGGCTTAATT
Flanking Amino Acid:
LIANKYKGKVEETRILGICD
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
77.7
31.7
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
62.9
0.29
1
62.9
38.3
Minor 5ss
30.8
-2.2
2.5
34
41.4
Minor BPS
59.2
0.37
1.9
74.82
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013181
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013728
69727533 - 69752833
25301