Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69747972_69748587_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

69747972 - 69748587

Intron Length:

616

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTATTGCAT

5'SS Class:

major

3'SS Sequence:

GCTCACGAAGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

CATTTCATAACA

Flanking Amino Acid:

ERAIAEVNLQNKDRYPGAPE

Intron Amino Acid Position:

439

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.2

0.26

1.1

57.8

40.7

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

54.1

0.09

1.1

47.8

39.2

Minor 5ss

40.3

-1.1

3.4

55.8

Minor BPS

64.8

0.46

1.6

73.15

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013181

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013728

69727533 - 69752833

25301