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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69753319_69757864_F

Intron Information:

Intron Rank:
143995
Intron Class:
major
Intron Phase:
Intron Coordinates:
69753319 - 69757864
Intron Length:
4546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGCCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATGAACATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
80.7
31.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
72.3
0.5
0.9
65.5
36.3
Minor 5ss
48.1
-0.2
2.4
63.2
35.1
Minor BPS
47.5
-0.1
1.9
67.11
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027610
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038461
69753255 - 69765835
12581