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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69766414_69767353_F

Intron Information:

Intron Rank:
143997
Intron Class:
major
Intron Phase:
Intron Coordinates:
69766414 - 69767353
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTAACCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
AAATATTGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
80.7
0.69
0.9
77.5
36.4
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
47.1
-0.2
1.6
54.71
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027610
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039334
69766113 - 69767598
1486