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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69788014_69788535_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69788014 - 69788535
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCTCCCTTTACA
Flanking Amino Acid:
YKMASQEELEKFLSRPEVYV
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
85.5
0.8
0.7
79.5
26
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
69.7
0.61
1.6
77.2
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013116
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013661
69786521 - 69792727
6207