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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69788706_69790180_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69788706 - 69790180
Intron Length:
1475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATCAT
5'SS Class:
major
3'SS Sequence:
TCTGTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCATAAT
U12 Branch Point Sequence:
ACAAGCATAATA
Flanking Amino Acid:
CPVTYLDGKQRYEALVPGNI
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
73
37.8
Major BPS
57.5
0.19
1.3
60.2
42.9
Major PPT
83.8
0.76
0.8
81.1
30.9
Minor 5ss
41.3
-1
3
58.1
46.5
Minor BPS
44.8
-0.4
2
52.28
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013116
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013661
69786521 - 69792727
6207