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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69790464_69791005_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69790464 - 69791005
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCCAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTCTTCTAAAAT
Flanking Amino Acid:
ALPMAGYLEQGVATSLIKAL
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.91
1
74.2
38.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
86.3
0.82
0.7
85.7
28.8
Minor 5ss
25.6
-2.8
3.6
35.8
40.9
Minor BPS
56.8
0.29
1.8
73.29
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013116
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013661
69786521 - 69792727
6207