About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69791121_69792524_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69791121 - 69792524
Intron Length:
1404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTAC
5'SS Class:
major
3'SS Sequence:
TTTGTTCCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTCAC
U12 Branch Point Sequence:
TTGTTGGTCACA
Flanking Amino Acid:
ALLFVACHLKAHNPRGSAQG
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
70
37.3
Major BPS
59.8
0.24
1.3
63.1
44.5
Major PPT
82.3
0.73
0.8
77.6
31.2
Minor 5ss
42.6
-0.8
3.2
58.3
46.6
Minor BPS
41.3
-0.6
2.8
61.8
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013116
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013661
69786521 - 69792727
6207