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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69792812_69794432_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
69792812 - 69794432
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TATATTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTGTTTTAAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.4
0.66
0.8
74.3
36
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
61
0.42
1.7
75.57
41.7

Associated Gene:

Gene:
ZBTB24
Ensembl Gene ID:
ENSAPLG00000012630
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013154
69792525 - 69800774
8250