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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69795433_69795854_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69795433 - 69795854
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCCTT
5'SS Class:
strong_major
3'SS Sequence:
CGTCTGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TACTTCCTAATG
Flanking Amino Acid:
FLAIHQRSHTGERPFKCSEC
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72.7
44.5
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
77.1
0.61
0.9
72.9
37.4
Minor 5ss
42.4
-0.8
3.5
64.4
47
Minor BPS
55.7
0.04
1.7
60.62
41.6

Associated Gene:

Gene:
ZBTB24
Ensembl Gene ID:
ENSAPLG00000012630
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013154
69792525 - 69800774
8250