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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69796265_69796933_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
69796265 - 69796933
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCACAA
5'SS Class:
major
3'SS Sequence:
TTGTTGCGACAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TATGCACTGACA
Flanking Amino Acid:
QLKSHYRVHTGRSLPECNQC
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
60.5
40.1
Major BPS
71.3
0.53
1
61.3
37
Major PPT
54.4
0.1
1.2
54
45.1
Minor 5ss
42.9
-0.8
2.9
56.3
47.8
Minor BPS
48.2
-0.1
2
65.62
40.3

Associated Gene:

Gene:
ZBTB24
Ensembl Gene ID:
ENSAPLG00000012630
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013154
69792525 - 69800774
8250