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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69797018_69799127_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69797018 - 69799127
Intron Length:
2110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTGATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
TTCTTTTTGATA
Flanking Amino Acid:
QLKKHLRTHTGEKPFTCEIC
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.4
33
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
80.8
0.69
0.9
79.8
32.4
Minor 5ss
39.3
-1.2
3
52.1
44.5
Minor BPS
67.6
0.55
1.1
72.72
33.6

Associated Gene:

Gene:
ZBTB24
Ensembl Gene ID:
ENSAPLG00000012630
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013154
69792525 - 69800774
8250