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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69799210_69800107_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69799210 - 69800107
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTCTTTTACA
Flanking Amino Acid:
SSLQTHIRIHRGEKPYSCGI
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
100
1.24
0.5
100
0
Major PPT
89.1
0.88
0.7
83.7
31.3
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
71.8
0.68
1.6
80.12
35.4

Associated Gene:

Gene:
ZBTB24
Ensembl Gene ID:
ENSAPLG00000012630
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013154
69792525 - 69800774
8250