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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69809090_69809555_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69809090 - 69809555
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CATGTCCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATG
Flanking Amino Acid:
FYTKHLKNSQHVFVYLDIAI
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.1
1.16
0.7
89.2
28.7
Major BPS
100
1.24
0.5
100
0
Major PPT
61.5
0.26
1
55.5
39
Minor 5ss
25.7
-2.8
3.6
35.8
41.1
Minor BPS
53.3
-0
1.8
61.75
41.5

Associated Gene:

Gene:
PPIL6
Ensembl Gene ID:
ENSAPLG00000012560
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013091
69808101 - 69814024
5924