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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69809911_69810666_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69809911 - 69810666
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTCTGCCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CGGCCTCTGACT
Flanking Amino Acid:
LVKNGWIQGGDIVTGKRDGG
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
80.1
28.5
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
73.5
0.53
0.9
65.3
36.3
Minor 5ss
45.4
-0.5
2.7
60.6
44.5
Minor BPS
48.1
-0
1.7
61.9
42.2

Associated Gene:

Gene:
PPIL6
Ensembl Gene ID:
ENSAPLG00000012560
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013091
69808101 - 69814024
5924