About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69810724_69812584_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69810724 - 69812584
Intron Length:
1861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TATCCCTCAACT
Flanking Amino Acid:
GESIYGPTFEDENFAIRHKG
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
80.3
0.68
0.8
72.6
36.9
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
73.9
0.83
1.5
87.78
36.7

Associated Gene:

Gene:
PPIL6
Ensembl Gene ID:
ENSAPLG00000012560
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013091
69808101 - 69814024
5924