About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69836206_69838971_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69836206 - 69838971
Intron Length:
2766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGAG
5'SS Class:
major
3'SS Sequence:
TCTTCTGTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATGATCT
Flanking Amino Acid:
DKLKKLLHKQKQMLLEMGHQ
Intron Amino Acid Position:
700

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.2
64.9
41.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81
0.7
0.8
76.7
31.9
Minor 5ss
43.7
-0.7
3
57.3
47.4
Minor BPS
53.6
0.19
2
78.23
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012348
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012850
69833967 - 69863318
29352