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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69840893_69844721_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69840893 - 69844721
Intron Length:
3829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TCTACTTTTACG
Flanking Amino Acid:
NGDLKEYLSKEQLQLLQDEN
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
74.2
0.6
1
67
39.4
Major PPT
77
0.61
0.9
73.6
35.6
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
58.1
0.11
1.8
63.96
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012348
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012850
69833967 - 69863318
29352