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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69844875_69845795_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69844875 - 69845795
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTACA
5'SS Class:
major
3'SS Sequence:
TTTGTAACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTGTTTGTAACT
Flanking Amino Acid:
NLFVTCVHLKGKLDVYRLSI
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
74.4
36
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.1
0.63
0.9
71.6
38.3
Minor 5ss
36.3
-1.5
3
43.1
38
Minor BPS
55.4
0.25
2
74.34
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012348
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012850
69833967 - 69863318
29352