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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69848833_69849625_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69848833 - 69849625
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCAGAGGTA
5'SS Class:
major
3'SS Sequence:
TTGTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAAGAT
U12 Branch Point Sequence:
CAAGCTGTAAGA
Flanking Amino Acid:
RLMENYQESDVTFKKSHLQQ
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.6
0.25
1.3
65.1
35.7
Major BPS
49.8
-0
1.3
49.1
44.8
Major PPT
82.5
0.73
0.8
77.1
37.1
Minor 5ss
22.9
-3.1
4.6
40.1
46.7
Minor BPS
41.9
-0.6
2.2
48.3
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012348
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012850
69833967 - 69863318
29352