About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69852933_69853920_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
69852933 - 69853920
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCAGGTACT
5'SS Class:
major
3'SS Sequence:
TGATTGACACAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACAGAACT
Flanking Amino Acid:
TDCQPSLAKSNTNWLQSSKK
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
83.4
27.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
50
0
1.2
47.7
43.9
Minor 5ss
28.4
-2.5
4
43.1
38
Minor BPS
54
0.2
1.9
81.28
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012348
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012850
69833967 - 69863318
29352