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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69854073_69854510_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69854073 - 69854510
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAA
5'SS Class:
major
3'SS Sequence:
CCTTCCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
CAGACCTTCACA
Flanking Amino Acid:
NSINVNYNMQLCLCSLSDAD
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
64.9
37.3
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
81.7
0.71
0.7
73
31.9
Minor 5ss
35
-1.7
3.4
46.8
48.5
Minor BPS
53.7
0.11
1.9
61.07
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012348
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012850
69833967 - 69863318
29352